Anonymous FTP
HOME ＞ Software Resources ＞ Anonymous FTP
Following software developed in Human Genome Center are available. HGC
ftp server provides mirrors of some databases.
Original Contents
DBTSS
Database of human transcriptional start sites and full-length cDNAs (Profs Sugano and Nakai)
Mirrored Contents
1000 Genomes
1000 Genomes database (JPT only) by 1000 Genomes Project.
NCBI
Resources provided at NCBI (National Center for Biotechnology Information) including Genomes, SNP, Taxonomy, GEO etc. in addition to the GenBank, RefSeq, and UniGene databases.
Pfam, Rfam
Pfam: Protein family database by Washington University.
Rfam: RNA family database by Washington University.
InterPro
Integrated protein family database by EBI.
Software provided by other research institutions
NCBI
Similarity search program package BLAST and its compiled databases.
FASTA
Similarity search program package FASTA, also including SSEARCH.
ClustalW, ClustalX
ClustalW: Multiple sequence alignment program.
ClustalX: Graphical user interface for the ClustalW.
PHYLIP
Phylogenetic analysis program package.
HMMER, INFERNAL
HMMER: Protein family search program by profile hidden Markov models.
INFERNAL: RNA family search program by covariance models.
EMBOSS
Integrated program package for sequence analysis.
InterProScan
Protein family search program for the InterPro database.
exonerate, Wise2
exonerate: Generic sequence comparison program including protein to genomic DNA mapping.
Wise2: Program for comparing a protein sequence to a genomic DNA.
MEME
Program for discovering motifs within the sequences.