DNAのワークフロー
==================


.. graphviz::

    digraph G{
        node [shape=diamond] fq2bam fastqc fastqc_list sv snv cnv msi hrd hyper annovar qc genomon multiqc check virus;
        node [shape=box,style=rounded] fastq bam vcf_snv vcf_sv;
            fastq [label="fastq"];
            fastqc [label="FastQC"];
            fastqc_list [label="FastQC_list"];
            bam [label="bam"];
            fq2bam [label="PARABRICKS FQ2BAM"];
            sv [label="SV"];
            snv [label="SNV"];
            msi [label="MSI"];
            cnv [label="CNV"];
            hrd [label="HRD"];
            hyper [label="hyperClust"];
            annovar [label="Annovar"];
            genomon [label="Genomon"];
            check [label="NGSCheckMate"];
            virus [label="Virus"];
            multiqc [label="MultiQC"];
            qc [label="QC"];
            vcf_snv [label="vcf"];
            vcf_sv [label="vcf"];

        fastq->fastqc->fastqc_list;
        fastqc->multiqc;
        fastq->fq2bam->bam;
        bam->snv;
        bam->genomon;
        bam->qc->multiqc;
        snv->vcf_snv;
        vcf_snv->hrd;
        vcf_snv->hyper;
        vcf_snv->annovar;
        bam->sv->vcf_sv->hrd;
        bam->cnv->hrd;
        bam->cnv->hyper;
        bam->msi;
        bam->check;
        bam->virus;
        
    }