Supplementary Data

A regression analysis of gene expression in ES cells reveals two gene classes that are significantly different in epigenetic patterns
Sung-Joon Park and Kenta Nakai

BMC Bioinformatics, 12 (Suppl 1):S50, [Abstract]

• Figure S1, S3-S4: [PDF]
• Figure S2: Density profiles for 12 TFs in five peak datasets. [PDF]
• Table S1-S4: [PDF]
• Cytoscape file for Figure S4: Regulatory network of transcription factor interactions with epigenetic effects in mouse ES cell. [CYS]

• FP4 Peak Dataset (FP4_Peak.tar.gz)
• Score Matrix
  • Density Profile, Epigenetic effects (FP4_Score_Density.tar.gz)
  • Exponential Profile, Epigenetic effects (FP4_Score_Exponential.tar.gz)
• Epigenetic patterns (epigenetic_effects_17060genes.dat)