.. hoge documentation master file, created by sphinx-quickstart on Fri Nov 27 13:56:38 2020. You can adapt this file completely to your liking, but it should at least contain the root `toctree` directive. HGC_CovidPipeLine ================================ | HGC_CovidPipeLine ( CPL ) はSARS-CoV-2ゲノム解析パイプラインです。 | NGSによるSARS-CoV-2ゲノムのfastqファイルから変異コールを行い、 | VCFファイルを出力します。 .. gallery? .. toctree:: :maxdepth: 1 :caption: Quick Start-Up Guide quick_start.rst .. toctree:: :maxdepth: 1 :caption: Genome Analysis Documentation trimmomatic.rst mapping.rst mutation_call.rst bcftools.rst vf_consensus.rst summary_excel.rst .. toctree:: :maxdepth: 1 :caption: Users Guide pipeline_csv.rst pipeline_cfg.rst output_info.rst .. toctree:: :maxdepth: 1 :caption: Report pipeline_log.rst .. toctree:: :maxdepth: 1 :caption: Linux linux.rst .. toctree:: :maxdepth: 1 :caption: Pangolin pangolin.rst .. toctree:: :maxdepth: 1 :caption: Reference reference.rst .. toctree:: :maxdepth: 1 :caption: Information releasenote.rst mail.rst