IPSJ Yamashita SIG Research Award

Mr. Yohichi Sasaki, the presenter and the first author of our following paper was awarded the IPSJ Yamashita SIG Research Award in 2016. The presentation also has awarded the best student presentation award as below.

• Yoichi Sasaki, Tetsuo Shibuya, Kimito Ito, Hiroki Arimura, Efficient Approximate 3-Dimensional Point Set Matching and Its Application to  Molecular Pattern Matching, IPSJ SIG Technical Report, 2015-BIO-42(68), pp. 1-7, June 15, 2015.

SGBIO Best Student Presentation Award, SIGBIO, IPSJ

Mr. Yohichi Sasaki, the presenter and the first author of our following paper was awarded the SIGBIO Best Student Presentation Award by SIGBIO, IPSJ, in 2016.

• Yoichi Sasaki, Tetsuo Shibuya, Kimito Ito, Hiroki Arimura, Efficient Approximate 3-Dimensional Point Set Matching and Its Application to  Molecular Pattern Matching, IPSJ SIG Technical Report, 2015-BIO-42(68), pp. 1-7, June 15, 2015.

SGBIO Contribution Award, IPSJ

Tetsuo Shibuya received the SIGBIO Contribution Award from SIGBIO, IPSJ, on December 18, 2014.

SAR Presentation Award, The Pharmaceutical Society of Japan

Dr. Genki Terashi, the presenter and the first author of our following paper was awarded the SAR Presentation Award by the Pharmaceutical Society of Japan, for his presetation on our research. Related publication:

• Genki Terashi, Tetsuo Shibuya, and Mayuko Takeda-Shitaka, LB3D: a protein 3D substructure search program based on the lower bound of a RMSD value, Journal of Computational Biology, Vol. 19, No. 5, pp. 493-503, 2012.

Nature Genetics

A paper related to the ICGC project was published in Nature Genetics.

• Akihiro Fujimoto, Yasushi Totoki, Tetsuo Abe, Keith A Boroevich, Fumie Hosoda, Ha Hai Nguyen, Masayuki Aoki, Naoya Hoshono, Michiaki Kubo, Fuyuki Miya, Yasuhito Arai, Hiroyuki Takahashi, Takuya Shirakihara, Masao Nagasaki, Tetsuo Shibuya, Kaoru Nakano, Kumiko Watanabe-Makino, Hiroko Tanaka, Hiromi Nakamura, Jun Kusuda, Hidenori Ojima, Kazuaki Shimada, Takuji Okusaka, Masaki Ueno, Yoshinobu Shigekawa, Yoshiiku Kawakami, Koji Arihiro, Hideki Ohdan, Kunihito Gotoh, Osamu Ishikawa, Shun-ichi Ariizumi, Masakazu Yamamoto, Terumasa Yamada, Kazuaki Chayama, Tomoo Kosuge, Hiroki Yamaue, Naoyuki Kamatani, Satoru Miyano, Hitoshi Nakagama, Yusuke Nakamura, Tatsuhiko Tsunoda, Tatsuhiro Shibata, and Hidewaki Nakagawa. Whole Genome Sequencing of Liver Cancers Identifies Etiological Influences on Mutation Patterns and Recurrent Mutations in Chromatin Regulators. Nature Genetics, 2012.doi: 10.1038/ng.2291

MSR Japan New Faculty Award

Tetsuo Shibuya won the MSR Japan New Faculty Award from Microsoft co. ltd., on November 15, 2011.

FFIT Science Award

Tetsuo Shibuya won the FFIT Science Award on May 28, 2011.

Nature Genetics

A paper on the first Japanse sequenced whole genome was published in Nature Genetics, the journal with the highest impact factor.

• Akihiro Fujimoto, Hidewaki Nakagawa, Naoya Hosono, Kaoru Nakano, Tetsuo Abe, Keith A Boroevich, Masao Nagasaki, Rui Yamaguchi, Tetsuo Shibuya, Michiaki Kubo, Satoru Miyano, Yusuke Nakamura, and Tatsuhiko Tsunoda. Whole-genome Sequencing and Comprehensive Variant Analysis of a Japanese Individual Using Massively Parallel Sequencing, Nature Genetics, Vol. 42, 2010, pp. 931-936.

J. ACM

A paper on the "geometric suffix tree" was published in J. ACM, the top computer science journal of all fields.

• Tetsuo Shibuya, Geometric Suffix Tree: Indexing Protein 3-D Structures, Journal of the ACM, Vol. 57, No. 3, Article No.15, pp. 1-17, 2010.

RECOMB Best Paper Award

The following paper presented at the RECOMB 2009 conference, which is one of the two top conferences in computational biology, won the Best Paper Award. See also:the page on SMAD (Statistical Model-based Algorithm design).

• Tetsuo Shibuya, Searching Protein 3-D Structures in Linear Time, Proc. 13th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2009), 2009 LNBI 5541, pp 1-15. (PDF file)

IPSJ Yamashita SIG Research Award

Tetsuo Shibuya won the IPSJ Yamashita SIG Research Award on March 11, 2009.

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